AllenInstitute/mfishtools: Building Gene Sets and Mapping mFISH Data

This repository includes code for gene selection for spatial transcriptomics methods and for mapping of spatial transcriptomics (or RNA-Seq data) onto a RNA-Seq reference. Specific topics include: 1) Correlation-based mapping of cells to reference cell types 2) Iterative building of gene panels a greedy algorithm with pre-defined constraints 3) Visualizations related to gene mapping a gene panel selection

Getting started

Package details

AuthorJeremy Miller <jeremym@alleninstitute.org>
MaintainerJeremy Miller <jeremym@alleninstitute.org>
LicenseWhat license is it under?
Version0.0.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("AllenInstitute/mfishtools")
AllenInstitute/mfishtools documentation built on April 28, 2020, 4:02 a.m.