AllenInstitute/mfishtools: Building Gene Sets and Mapping mFISH Data

This repository includes code for gene selection for spatial transcriptomics methods and for mapping of spatial transcriptomics (or RNA-Seq data) onto a RNA-Seq reference. Specific topics include: 1) Correlation-based mapping of cells to reference cell types 2) Iterative building of gene panels a greedy algorithm with pre-defined constraints 3) Visualizations related to gene mapping a gene panel selection

install.packages("remotes")
remotes::install_github("AllenInstitute/mfishtools")