fractionCorrectPerNode: Fraction of correct calls per node

In AllenInstitute/mfishtools: Building Gene Sets and Mapping mFISH Data

Fraction of correct calls per node

Description

This function returns the fraction correctly assigned to each node (as defined that the actual and predicted cluster are both in the same node)

Usage

fractionCorrectPerNode(
  dendIn,
  clActual,
  clPredict,
  minCount = 0.1,
  defaultSum = -1,
  out = NULL
)

Arguments

dendIn	dendrogram for mapping. Ignored if minimizeHeight=FALSE
clActual	character vector of actual cluster assignments
clPredict	character vector of predicted cluster assignments
minCount	set to 0 results from clusters with fewer than this number of cells (default is to consider all clusters)
defaultSum	value to return in cases where there are fewer than minCount cells in the actual cluster (e.g., cases that aren't considered at all)
out	required for recursive function. Do not set!

Value

matrix of two columns: (1) node name and (2) the fraction of cells in that node that are correctly assigned

AllenInstitute/mfishtools documentation built on July 5, 2023, 4:20 p.m.