API for AllenInstitute/mfishtools
Building Gene Sets and Mapping mFISH Data
| Global functions | |
|---|---|
| buildMappingBasedMarkerPanel | Man page Source code |
| buildPanel_oneCluster | Man page Source code |
| buildQualityTable | Man page Source code |
| buildTreeFromGenePanel | Man page Source code |
| cellToClusterMapping_byCor | Man page Source code |
| cellToClusterMapping_byRank | Man page Source code |
| corTreeMapping | Man page Source code |
| corTreeMapping_withFilter | Man page Source code |
| distTreeMapping | Man page Source code |
| filterByClass | Man page Source code |
| filterCells | Man page Source code |
| filterPanelGenes | Man page Source code |
| fishScaleAndMap | Man page Source code |
| fractionCorrectPerNode | Man page Source code |
| fractionCorrectWithGenes | Man page Source code |
| generateMultipleCellReferenceSet | Man page Source code |
| getBetaScore | Man page Source code |
| getBranchList | Man page Source code |
| getConfusionMatrix | Man page Source code |
| getDend | Man page Source code |
| getNodeHeight | Man page Source code |
| getTopMatch | Man page Source code |
| get_subtree_label | Man page Source code |
| labelDend | Man page Source code |
| layerFraction | Man page Source code |
| layerScale | Man page Source code |
| lca | Man page Source code |
| leafToNodeMedians | Man page Source code |
| makeLCAtable | Man page Source code |
| map_dend | Man page Source code |
| mergeFish | Man page Source code |
| mfishtools | Man page |
| outputTopConfused | Man page Source code |
| plotConfusionVsConfidence | Man page Source code |
| plotCorrectWithGenes | Man page Source code |
| plotDistributions | Man page Source code |
| plotHeatmap | Man page Source code |
| plotNodes | Man page Source code |
| plotTsne | Man page Source code |
| possibleClustersByPriors | Man page Source code |
| quantileTruncate | Man page Source code |
| resolve_cl | Man page Source code |
| rfTreeMapping | Man page Source code |
| rotateXY | Man page Source code |
| rowMedians | Source code |
| smartLayerAllocation | Man page Source code |
| subsampleCells | Man page Source code |
| summarizeMatrix | Man page Source code |
| update_mfishtools | Man page Source code |
