Files in AllenInstitute/mfishtools
Building Gene Sets and Mapping mFISH Data
.Rbuildignore
.gitignore
CONTRIBUTION
DESCRIPTION
LICENSE
NAMESPACE
R/markerGenesAndMapping.r
R/mfishMapping.r
R/update.r
README.md
data/fishData.rda
data/metadata.rda
man/buildMappingBasedMarkerPanel.Rd
man/buildPanel_oneCluster.Rd
man/buildQualityTable.Rd
man/buildTreeFromGenePanel.Rd
man/cellToClusterMapping_byCor.Rd
man/cellToClusterMapping_byRank.Rd
man/corTreeMapping.Rd
man/corTreeMapping_withFilter.Rd
man/distTreeMapping.Rd
man/filterByClass.Rd
man/filterCells.Rd
man/filterPanelGenes.Rd
man/fishScaleAndMap.Rd
man/fractionCorrectPerNode.Rd
man/fractionCorrectWithGenes.Rd
man/generateMultipleCellReferenceSet.Rd
man/getBetaScore.Rd
man/getBranchList.Rd
man/getConfusionMatrix.Rd
man/getDend.Rd
man/getNodeHeight.Rd
man/getTopMatch.Rd
man/get_subtree_label.Rd
man/labelDend.Rd
man/layerFraction.Rd
man/layerScale.Rd
man/lca.Rd
man/leafToNodeMedians.Rd
man/makeLCAtable.Rd
man/map_dend.Rd
man/mergeFish.Rd
man/mfishtools.Rd
man/outputTopConfused.Rd
man/plotConfusionVsConfidence.Rd
man/plotCorrectWithGenes.Rd
man/plotDistributions.Rd
man/plotHeatmap.Rd
man/plotNodes.Rd
man/plotTsne.Rd
man/possibleClustersByPriors.Rd
man/quantileTruncate.Rd
man/resolve_cl.Rd
man/rfTreeMapping.Rd
man/rotateXY.Rd
man/smartLayerAllocation.Rd
man/subsampleCells.Rd
man/summarizeMatrix.Rd
man/update_mfishtools.Rd
mfishtools.Rproj
mfishtools_0.0.2.pdf
vignettes/.gitignore
vignettes/inhibitory_marker_mapping.Rmd
vignettes/inhibitory_marker_mapping.html
vignettes/inhibitory_marker_selection.Rmd
vignettes/inhibitory_marker_selection.html
