resolve_cl: Tree-based mapping (internal)

In AllenInstitute/mfishtools: Building Gene Sets and Mapping mFISH Data

Tree-based mapping (internal)

Description

Returns the mapped cluster call of each cell to each leaf. This function is called by map_dend

Usage

resolve_cl(
  cl.g,
  cl.med,
  markers,
  dat,
  map.dat,
  select.cells,
  p = 0.7,
  low.th = 0.2
)

Arguments

cl.g	all clusters
cl.med	cluster medians
markers	gene markers
dat	normalized data of the REFERENCE data set
map.dat	normalized data of the MAPPING data set. Default is to map the data onto itself.
select.cells	which cells to use?
p	proportion of marker genes to include in each iteration of the mapping algorithm.
low.th	the minimum difference in Pearson correlation required to decide on which branch to map to. otherwise, a random branch is chosen.

Value

a vector of the mapped cluster

AllenInstitute/mfishtools documentation built on July 5, 2023, 4:20 p.m.