API for BenBruyneel/proteinDiscover
ProteinDiscover
| Global functions | |
|---|---|
| MSfileInfo | Man page Source code |
| SearchInfo | Man page Source code |
| allNodesTable | Man page Source code |
| analysisDefinition | Man page Source code |
| blobEstimateTypes | Source code |
| blobLength | Man page Source code |
| calcAllIFIs | Man page Source code |
| calcData | Man page Source code |
| calcIFIs | Man page Source code |
| columnSpecials | Man page Source code |
| convertRawColumn | Source code |
| convertRawInteger | Source code |
| convertRawNumeric | Source code |
| convertRawSpecial | Source code |
| convertRawSpecialToString | Source code |
| createDiagrammeRString | Man page Source code |
| dbClose | Man page Source code |
| dbGetAnnotatedProteins | Man page Source code |
| dbGetAnnotationGroups | Man page Source code |
| dbGetAnnotationGroupsFiltered | Man page Source code |
| dbGetConsensusIDs | Man page Source code |
| dbGetConsensusTable | Man page Source code |
| dbGetMSnSpectrumInfo | Man page Source code |
| dbGetMassSpectrumItems | Man page Source code |
| dbGetModificationPeptideIDs | Man page Source code |
| dbGetModificationsSitesIDs | Man page Source code |
| dbGetModificationsTable | Man page Source code |
| dbGetPeptideIDs | Man page Source code |
| dbGetPeptideTable | Man page Source code |
| dbGetProteinAnnotationGroupIDs | Man page Source code |
| dbGetProteinFiltered | Man page Source code |
| dbGetProteinGroupIDs | Man page Source code |
| dbGetProteinGroups | Man page Source code |
| dbGetProteinIDs | Man page Source code |
| dbGetProteinTable | Man page Source code |
| dbGetProteinUniqueSequenceIDs | Man page Source code |
| dbGetProteins | Man page Source code |
| dbGetPsmIDs | Man page Source code |
| dbGetPsmTable | Man page Source code |
| dbGetQuanSpectrumIDs | Man page Source code |
| dbGetQuanSpectrumInfoTable | Man page Source code |
| dbGetTable | Man page Source code |
| dbOpen | Man page Source code |
| determineBlobLengths | Source code |
| determineBlobType | Source code |
| determineBlobTypeRaw | Source code |
| determineBlobTypes | Man page Source code |
| dfTransformRaws | Man page Source code |
| df_replace | Man page Source code |
| getAcquistionDate | Man page Source code |
| getAcquistionDateTime | Man page Source code |
| getBlobs | Man page Source code |
| getCorrections | Source code |
| getPeptideInfo | Man page Source code |
| getPeptideInfoRaw | Man page Source code |
| getProteinInfo | Man page Source code |
| getProteinInfoRaw | Man page Source code |
| ifelseProper | Source code |
| intoTable | Source code |
| is.Class | Source code |
| isMasterProtein | Man page |
| knockOutProteins | Man page Source code |
| na.date | Man page Source code |
| nodeNames | Source code |
| nodeParameters | Source code |
| nodeTable | Man page Source code |
| nodes | Man page Source code |
| pQuanInfo | Man page |
| proteinIDTypes | Man page Source code |
| psmAmbiguity | Man page |
| quanInfo | Man page |
| quanInfoDetails | Man page |
| quanRatio | Source code |
| quanRatios | Source code |
| replacementStrings | Man page Source code |
| replicateInfo | Source code |
| sampleGroupIn | Source code |
| sampleInfo | Source code |
| samplesInfo | Source code |
| spectrum.centroid | Man page Source code |
| spectrum.header | Man page Source code |
| spectrum.precursor.additionalInfo | Man page Source code |
| spectrum.precursor.centroid | Man page Source code |
| spectrum.precursor.header | Man page Source code |
| spectrum.precursor.info | Man page Source code |
| spectrum.precursor.profile | Man page Source code |
| spectrum.precursor.scanEvent | Man page Source code |
| spectrum.profile | Man page Source code |
| spectrum.scanEvent | Man page Source code |
| studyDefinitionExtensionSettings | Man page Source code |
| studyDefinitionExtensions | Man page Source code |
| studyDefinitionFactors | Man page Source code |
| studyDefinitionFileSets | Man page Source code |
| studyDefinitionQuanMethods | Man page Source code |
| studyDefinitionSamples | Man page Source code |
| system.date | Man page Source code |
| tableNames | Man page Source code |
| thermo.date | Man page Source code |
| tmt10Channels | Man page Source code |
| tmt11Channels | Man page Source code |
| totalSearchTime | Man page Source code |
| transformSpectrumRaw | Man page Source code |
| translateInfo | Source code |
| workflowInfo | Man page Source code |
