Files in BenBruyneel/proteinDiscover

ProteinDiscover

LICENSE.md R/TMT.R R/helper.R R/proteinDatabase.R R/spectra.R R/studyDefinition.R R/transformRaw.R R/translations.R R/workFlows.R README.md man/MSfileInfo.Rd man/SearchInfo.Rd man/allNodesTable.Rd man/analysisDefinition.Rd man/blobLength.Rd man/calcAllIFIs.Rd man/calcData.Rd man/calcIFIs.Rd man/columnSpecials.Rd man/createDiagrammeRString.Rd man/dbClose.Rd man/dbGetAnnotatedProteins.Rd man/dbGetAnnotationGroups.Rd man/dbGetAnnotationGroupsFiltered.Rd man/dbGetConsensusIDs.Rd man/dbGetConsensusTable.Rd man/dbGetMSnSpectrumInfo.Rd man/dbGetMassSpectrumItems.Rd man/dbGetModificationPeptideIDs.Rd man/dbGetModificationsSitesIDs.Rd man/dbGetModificationsTable.Rd man/dbGetPeptideIDs.Rd man/dbGetPeptideTable.Rd man/dbGetProteinAnnotationGroupIDs.Rd man/dbGetProteinFiltered.Rd man/dbGetProteinGroupIDs.Rd man/dbGetProteinGroups.Rd man/dbGetProteinIDs.Rd man/dbGetProteinTable.Rd man/dbGetProteinUniqueSequenceIDs.Rd man/dbGetProteins.Rd man/dbGetPsmIDs.Rd man/dbGetPsmTable.Rd man/dbGetQuanSpectrumIDs.Rd man/dbGetQuanSpectrumInfoTable.Rd man/dbGetTable.Rd man/dbOpen.Rd man/determineBlobTypes.Rd man/dfTransformRaws.Rd man/df_replace.Rd man/getAcquistionDate.Rd man/getAcquistionDateTime.Rd man/getBlobs.Rd man/getPeptideInfo.Rd man/getPeptideInfoRaw.Rd man/getProteinInfo.Rd man/getProteinInfoRaw.Rd man/isMasterProtein.Rd man/knockOutProteins.Rd man/na.date.Rd man/nodeTable.Rd man/nodes.Rd man/pQuanInfo.Rd man/proteinIDTypes.Rd man/psmAmbiguity.Rd man/quanInfo.Rd man/quanInfoDetails.Rd man/replacementStrings.Rd man/spectrum.centroid.Rd man/spectrum.header.Rd man/spectrum.precursor.additionalInfo.Rd man/spectrum.precursor.centroid.Rd man/spectrum.precursor.header.Rd man/spectrum.precursor.info.Rd man/spectrum.precursor.profile.Rd man/spectrum.precursor.scanEvent.Rd man/spectrum.profile.Rd man/spectrum.scanEvent.Rd man/studyDefinitionExtensionSettings.Rd man/studyDefinitionExtensions.Rd man/studyDefinitionFactors.Rd man/studyDefinitionFileSets.Rd man/studyDefinitionQuanMethods.Rd man/studyDefinitionSamples.Rd man/system.date.Rd man/tableNames.Rd man/thermo.date.Rd man/tmt10Channels.Rd man/tmt11Channels.Rd man/totalSearchTime.Rd man/transformSpectrumRaw.Rd man/workflowInfo.Rd tests/testthat.R tests/testthat/helper.R tests/testthat/testProteinDatabase.R tests/testthat/testStudyDefinition.R tests/testthat/testTMT.R tests/testthat/testTransformRaw.R tests/testthat/testTranslations.R tests/testthat/testWorkflows.R vignettes/manual.Rmd