auc_thresh_kmeans: This function takes the regulon AUC values and determines...
In FloWuenne/scFunctions: Functions for single cell data analysis
Description
Usage
Arguments
Examples
View source: R/auc_thresh_kmeans.R
Description
This function takes the regulon AUC values and determines thresholds for binarizatio based on kmeans clustering.
Less specific than the SCENIC function AUCell_exploreThresholds but much faster.
Usage
1
auc_thresh_kmeans(regulonAUC)
Arguments
regulonAUC
The AUC values for all regulons as calculated by SCENIC (content of file:3.4_regulonAUC.Rds).
Examples
1
regulon_thresholds <- auc_thresh_kmeans(regulonAUC)
FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.
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Description Usage Arguments Examples
View source: R/auc_thresh_kmeans.R
Description
This function takes the regulon AUC values and determines thresholds for binarizatio based on kmeans clustering. Less specific than the SCENIC function AUCell_exploreThresholds but much faster.
Usage
1 | auc_thresh_kmeans(regulonAUC)
|
Arguments
regulonAUC |
The AUC values for all regulons as calculated by SCENIC (content of file:3.4_regulonAUC.Rds). |
Examples
1 | regulon_thresholds <- auc_thresh_kmeans(regulonAUC)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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