prepare_clustering_for_shiny: Function to prepare as RDS object for...

In FloWuenne/scFunctions: Functions for single cell data analysis

Description

Function to prepare as RDS object for http://andelfingerlab.heart_maturation.genap.ca from a precomputed Seurat object. The new object will have optimized size and data structure for usage in the Rshiny server.

Usage

prepare_clustering_for_shiny(
  seurat_object,
  marker_table,
  label = "E14.5",
  imputed = FALSE,
  output_dir = "."
)

Arguments

seurat_object	The S4 Seurat object which contains filtered and normalized cells in the data slot.
label	The sample label that will be used for naming the file.
imputed	logical that indicates whether data has been imputed and there is a data frame in @imputed or not. default = FALSE
output_dir	Directory in which to save the new RDS object. default = "."

Examples

extract_data_for_shiny_clustering()

FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.