export_seurat_to_shiny_scCluster: Exports data from a Seurat object to the formats required by...

In FloWuenne/scFunctions: Functions for single cell data analysis

Description

Exports data from a Seurat object to the formats required by scCluster_genap2

Usage

export_seurat_to_shiny_scCluster(
  seurat_object,
  seurat_object_version = "v3",
  embedding_used = "UMAP",
  data_slot = "RNA",
  export_dir = "."
)

Arguments

seurat_object	The Seurat object to be processed.
seurat_object_version	Version of the seurat object. Either v2 or v3. Default = v3
embedding_used	Dimensional reduction technique used.Either 'UMAP' or 'TSNE'. Default = 'UMAP'.
data_slot	Data slot to extract the normalized data from. Either 'RNA' or 'SCT'. Default = 'RNA'.
export_dir	Directory to store the exported files into.

FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.