summarize_cell_types: Function to summarize and analyze the number of cells and...
In FloWuenne/scFunctions: Functions for single cell data analysis

Function to summarize and analyze the number of cells and fraction of each cell type over multiple replicates in a Seurat object.

summarize_cell_types(
  seurat_object,
  Replicate_column,
  grouping_var,
  grouping_var_order = NULL,
  save_plot = FALSE,
  output_dir = "."
)

`seurat_object`	The S4 Seurat object which contains filtered and normalized cells in the data slot.
`Replicate_column`	The column in the meta.data table that contains biological replicate information.
`grouping_var_order`	User supplied vector of order for grouping variable.
`save_plot`	logical of whether to save the plot as png. Default = FALSE.
`output_dir`	Output directory of where to save the plot and corresponding table.
`group_by`	The column that contains the groups to be compared.