binarize_regulons: Uses AUC thresholds to binarize regulon activity. Binary...
In FloWuenne/scFunctions: Functions for single cell data analysis
Description
Usage
Arguments
Examples
View source: R/binarize_regulons.R
Description
Uses AUC thresholds to binarize regulon activity. Binary regulons are stored as lists of dataframes.
Usage
1
binarize_regulons(regulonAUC, thresholds)
Arguments
regulonAUC
The AUC values for all regulons as calculated by SCENIC (content of file:3.4_regulonAUC.Rds).
thresholds
The AUC thresholds as determined by auc_thresh_kmeans or another method. Format has to be a named list with regulons as names and thresholds as values!
Examples
1
binary_regulons <- binarize_regulons(regulonAUC,regulon_thresholds)
FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.
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Description Usage Arguments Examples
View source: R/binarize_regulons.R
Description
Uses AUC thresholds to binarize regulon activity. Binary regulons are stored as lists of dataframes.
Usage
1 | binarize_regulons(regulonAUC, thresholds)
|
Arguments
regulonAUC |
The AUC values for all regulons as calculated by SCENIC (content of file:3.4_regulonAUC.Rds). |
thresholds |
The AUC thresholds as determined by auc_thresh_kmeans or another method. Format has to be a named list with regulons as names and thresholds as values! |
Examples
1 | binary_regulons <- binarize_regulons(regulonAUC,regulon_thresholds)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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