auc_thresh_kmeans_nextflow: This function is to analyze the nextflow implementation...
In FloWuenne/scFunctions: Functions for single cell data analysis
Description
Usage
Arguments
Examples
View source: R/auc_thresh_kmeans_nextflow.R
Description
This function is to analyze the nextflow implementation results of SCENIC!
This function takes the regulon AUC values and determines thresholds for binarizatio based on kmeans clustering.
Less specific than the SCENIC function AUCell_exploreThresholds but much faster.
Usage
1
auc_thresh_kmeans_nextflow(regulonAUC)
Arguments
regulonAUC
The AUC values for all regulons as calculated by SCENIC (content of file:3.4_regulonAUC.Rds).
Examples
1
2
regulon_thresholds <- auc_thresh_kmeans(regulonAUC)
#'
FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.
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Description Usage Arguments Examples
View source: R/auc_thresh_kmeans_nextflow.R
Description
This function is to analyze the nextflow implementation results of SCENIC! This function takes the regulon AUC values and determines thresholds for binarizatio based on kmeans clustering. Less specific than the SCENIC function AUCell_exploreThresholds but much faster.
Usage
1 | auc_thresh_kmeans_nextflow(regulonAUC)
|
Arguments
regulonAUC |
The AUC values for all regulons as calculated by SCENIC (content of file:3.4_regulonAUC.Rds). |
Examples
1 2 | regulon_thresholds <- auc_thresh_kmeans(regulonAUC)
#'
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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