calculate_rrs: Calculates Regulon specificity score (RSS) from binary...
In FloWuenne/scFunctions: Functions for single cell data analysis
View source: R/calculate_rrs.R
Description
Calculates Regulon specificity score (RSS) from binary regulon activity.
Usage
1
calculate_rrs(metadata, binary_regulons, cell_type_column)
Arguments
metadata
Dataframe containing metadata about cells. Has to create a column named cell_type that assigns groupings to cells.
Can be the meta.data slot from a Seurat object.
binary_regulons
Data frame with bianry regulons, where regulons are rows and columns are cells. Can be created from output of binarize_regulons().
FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.
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View source: R/calculate_rrs.R
Description
Calculates Regulon specificity score (RSS) from binary regulon activity.
Usage
1 | calculate_rrs(metadata, binary_regulons, cell_type_column)
|
Arguments
metadata |
Dataframe containing metadata about cells. Has to create a column named cell_type that assigns groupings to cells. Can be the meta.data slot from a Seurat object. |
binary_regulons |
Data frame with bianry regulons, where regulons are rows and columns are cells. Can be created from output of binarize_regulons(). |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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