Files in FloWuenne/scFunctions
Functions for single cell data analysis

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/DE_Seurat.R R/Impute_Seurat_MAGIC.R R/auc_thresh_kmeans.R R/auc_thresh_kmeans_nextflow.R R/binarize_regulons.R R/binarize_regulons_nextflow.R R/calc_csi_module_activity.R R/calculate_csi.R R/calculate_rrs.R R/export_data_from_seurat.R R/export_seurat_to_shiny_scCluster.R R/extract_data_for_shiny_clustering.R R/perform_fgsea.R R/plot_bin_regulon_UMAP.R R/plot_csi_modules.R R/plot_rrs_ranking.R R/prepare_clustering_for_shiny.R R/summarize_cell_types.R README.md
Tutorials/Rplot001.jpeg
Tutorials/process_SCENIC.Rmd Tutorials/process_SCENIC.md
Tutorials/process_SCENIC_files/figure-gfm/unnamed-chunk-12-1.png
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Tutorials/process_SCENICprotocol.Rmd
Tutorials/process_SCENICprotocol.html
example_data/metadata_sub.Rds
example_data/regulonAUC_subset.Rds
man/DE_Seurat.Rd man/auc_thresh_kmeans.Rd man/auc_thresh_kmeans_nextflow.Rd man/binarize_regulons.Rd man/binarize_regulons_nextflow.Rd man/calc_csi_module_activity.Rd man/calculate_csi.Rd man/calculate_rrs.Rd man/export_data_from_seurat.Rd man/export_seurat_to_shiny_scCluster.Rd man/extract_data_for_shiny_clustering.Rd man/impute_seurat_MAGIC.Rd man/perform_fgsea.Rd man/plot_bin_regulon_UMAP.Rd man/plot_csi_modules.Rd man/plot_rrs_ranking.Rd man/prepare_clustering_for_shiny.Rd man/summarize_cell_types.Rd
scFunctions.Rproj
FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.