binarize_regulons_nextflow: This function is to analyze the nextflow implementation...

In FloWuenne/scFunctions: Functions for single cell data analysis

Description

This function is to analyze the nextflow implementation results of SCENIC! Uses AUC thresholds to binarize regulon activity. Binary regulons are stored as lists of dataframes.

Usage

binarize_regulons_nextflow(regulonAUC, thresholds)

Arguments

regulonAUC	The AUC values for all regulons as calculated by SCENIC (content of file:3.4_regulonAUC.Rds).
thresholds	The AUC thresholds as determined by auc_thresh_kmeans or another method. Format has to be a named list with regulons as names and thresholds as values!

Examples

binary_regulons <- binarize_regulons(regulonAUC,regulon_thresholds)

FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.