plot_bin_regulon_UMAP: Calculates Regulon specificity score (RSS) from binary...
In FloWuenne/scFunctions: Functions for single cell data analysis
View source: R/plot_bin_regulon_UMAP.R
Description
Calculates Regulon specificity score (RSS) from binary regulon activity.
Usage
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plot_bin_regulon_UMAP(
seurat_object,
binary_regulons,
regulon_name,
orientation = "wide",
highlight_color = "red"
)
Arguments
seurat_object
Processed seurat object (v3) with clustering results.
binary_regulons
Binary regulon activity as named list.
regulon_name
Name of the regulon to plot.
orientation
Orientation of the plots. Wide = UMAP plots side-by-side, long = UMAP plots stacked.
highlight_color
Color with which to highlight the active cells for a regulon
FloWuenne/scFunctions documentation built on June 3, 2021, 6:42 p.m.
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View source: R/plot_bin_regulon_UMAP.R
Description
Calculates Regulon specificity score (RSS) from binary regulon activity.
Usage
1 2 3 4 5 6 7 | plot_bin_regulon_UMAP(
seurat_object,
binary_regulons,
regulon_name,
orientation = "wide",
highlight_color = "red"
)
|
Arguments
seurat_object |
Processed seurat object (v3) with clustering results. |
binary_regulons |
Binary regulon activity as named list. |
regulon_name |
Name of the regulon to plot. |
orientation |
Orientation of the plots. Wide = UMAP plots side-by-side, long = UMAP plots stacked. |
highlight_color |
Color with which to highlight the active cells for a regulon |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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