plot_qualities: Plots the quality profile for an entire experiment.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
plot_qualities R Documentation
Plots the quality profile for an entire experiment.
Description
Plots the quality profile for an entire experiment.
Usage
plot_qualities(qp, min_score = 10)
Arguments
qp
A quality profile as returned by
quality_profile.
min_score
Smallest acceptable score. Defaults to 10 (10
error). A reference line will be plotted but no data will be discarded.
Value
A ggplot2 plot mapping the read positions to mean quality for each
sample. Will be facetted into fowrward and reverse if applicable.
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| plot_qualities | R Documentation |
Plots the quality profile for an entire experiment.
Description
Plots the quality profile for an entire experiment.
Usage
plot_qualities(qp, min_score = 10)
Arguments
qp |
A quality profile as returned by
|
min_score |
Smallest acceptable score. Defaults to 10 (10 error). A reference line will be plotted but no data will be discarded. |
Value
A ggplot2 plot mapping the read positions to mean quality for each sample. Will be facetted into fowrward and reverse if applicable.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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