preprocess: Runs preprocessing of sequencing reads.

In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis

Runs preprocessing of sequencing reads.

Description

Runs preprocessing of sequencing reads.

Usage

preprocess(object, ...)

Arguments

object	An experiment data table as returned by find_read_files or a worflow object.
...	A configuration as returned by config_preprocess.

Value

A list containing the workflow results:

passed_reads

How many reads were kept in each step. Rows are samples and columns are workflow steps.

files

Preprocessed sequencing files list.

Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.