quality_profile: Get the quality profiles and base calls for each cycle across...
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
quality_profile R Documentation
Get the quality profiles and base calls for each cycle across all
input files.
Description
Get the quality profiles and base calls for each cycle across all
input files.
Usage
quality_profile(files, n = 10000)
Arguments
files
A data table containing the files as returned by
find_read_files.
n
How many reads to sample from each file. If a file has less
all of them will be used.
Value
A list with two data tables giving the sampled metrics per cycle /
base pair:
- qualities
The quality scores for each cycle and sample.
- bases
The base calls for each cycle and sample.
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| quality_profile | R Documentation |
Get the quality profiles and base calls for each cycle across all input files.
Description
Get the quality profiles and base calls for each cycle across all input files.
Usage
quality_profile(files, n = 10000)
Arguments
files |
A data table containing the files as returned by
|
n |
How many reads to sample from each file. If a file has less all of them will be used. |
Value
A list with two data tables giving the sampled metrics per cycle / base pair:
- qualities
The quality scores for each cycle and sample.
- bases
The base calls for each cycle and sample.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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