reads_to_phyloseq: Converts read count data to a phyloseq object.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
reads_to_phyloseq R Documentation
Converts read count data to a phyloseq object.
Description
Converts read count data to a phyloseq object.
Usage
reads_to_phyloseq(counts, feature_col, metadata = NULL, id_col = "sample_id")
Arguments
counts
A data.table containing at least columns "reads",
"sample_id", and features.
feature_col
Column in the count table containing the features.
metadata
A metadata in data.table format to use.
id_col
Column in the metadata corresponding to the sample IDs
in the read counts.
Value
A phyloseq object for the data.
Examples
NULL
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| reads_to_phyloseq | R Documentation |
Converts read count data to a phyloseq object.
Description
Converts read count data to a phyloseq object.
Usage
reads_to_phyloseq(counts, feature_col, metadata = NULL, id_col = "sample_id")
Arguments
counts |
A data.table containing at least columns "reads", "sample_id", and features. |
feature_col |
Column in the count table containing the features. |
metadata |
A metadata in data.table format to use. |
id_col |
Column in the metadata corresponding to the sample IDs in the read counts. |
Value
A phyloseq object for the data.
Examples
NULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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