silva_build_taxonomy: Build the lineages for the entire SILVA database.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
silva_build_taxonomy R Documentation
Build the lineages for the entire SILVA database.
Description
Build the lineages for the entire SILVA database.
Usage
silva_build_taxonomy(taxmap, taxonomy)
Arguments
taxmap
The SILVA taxonomy map ('taxmap_slv_*.txt').
taxonomy
The SILVA taxonomy.
Value
The SILVA lineage mapping every taxon to its upper ranks up to the
root.
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| silva_build_taxonomy | R Documentation |
Build the lineages for the entire SILVA database.
Description
Build the lineages for the entire SILVA database.
Usage
silva_build_taxonomy(taxmap, taxonomy)
Arguments
taxmap |
The SILVA taxonomy map ('taxmap_slv_*.txt'). |
taxonomy |
The SILVA taxonomy. |
Value
The SILVA lineage mapping every taxon to its upper ranks up to the root.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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