taxa_metrics: Calculates what percentage of taxa was found in a reference...
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
taxa_metrics R Documentation
Calculates what percentage of taxa was found in a reference set.
Description
Note that both arguments must of class "taxonomyTable" from the
phyloseq package which can be obtained with the tax_table
method.
Usage
taxa_metrics(tax_table, ref)
Arguments
tax_table
Measured taxonomy table.
ref
Reference taxonomy table.
Value
A data frame denoting performance metrics for taxa identification.
Examples
NULL
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| taxa_metrics | R Documentation |
Calculates what percentage of taxa was found in a reference set.
Description
Note that both arguments must of class "taxonomyTable" from the
phyloseq package which can be obtained with the tax_table
method.
Usage
taxa_metrics(tax_table, ref)
Arguments
tax_table |
Measured taxonomy table. |
ref |
Reference taxonomy table. |
Value
A data frame denoting performance metrics for taxa identification.
Examples
NULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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