with_classification: Quantify classification rates for each taxonomic rank.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
View source: R/workflow_dada2.R
with_classification R Documentation
Quantify classification rates for each taxonomic rank.
Description
Quantify classification rates for each taxonomic rank.
Usage
with_classification(ps)
Arguments
ps
A phyloseq object.
Value
A data table with 3 columns (rank, asvs, reads) specifying the
fraction of ASVs or reads that were classified successfully on that
taxa rank.
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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View source: R/workflow_dada2.R
| with_classification | R Documentation |
Quantify classification rates for each taxonomic rank.
Description
Quantify classification rates for each taxonomic rank.
Usage
with_classification(ps)
Arguments
ps |
A phyloseq object. |
Value
A data table with 3 columns (rank, asvs, reads) specifying the fraction of ASVs or reads that were classified successfully on that taxa rank.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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