litfover_func: Convert hg19 <-> hg38 coordinates

In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis

Convert hg19 <-> hg38 coordinates

Description

Using rtracklayer and GenomicRanges, this function converts hg19 <-> hg38 coordinates

Usage

litfover_func(
  folderWithLiftoverInfo,
  data2convert,
  hg19ToHg38 = FALSE,
  hg38ToHg19 = FALSE
)

Arguments

folderWithLiftoverInfo	Folder containing liftover chain information retrieved from UCSC website
hg19ToHg38	Boolean to transfrom hg19 to hg38
hg38ToHg19	Boolean to transfrom hg38 to hg19
df2convert	GenomicRanges or coordinate Dataframe provided to convert to GenomicRanges

HCGB-IGTP/HCGB.IGTP.DAnalysis documentation built on April 13, 2025, 12:03 a.m.