locus_plotter: RnBeads Locus plotter caller

In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis

RnBeads Locus plotter caller

Description

This functions calls rnb.plot.locus.profile for a gene or region of interest

Usage

locus_plotter(
  RnBeads_object,
  grouping_class,
  gene_name,
  comparison,
  outdir,
  chr,
  start,
  end
)

Arguments

RnBeads_object	RnBeads object
grouping_class	rnb.sample.groups output grouping samples
gene_name	Name of the gene/region to create pdf
comparison	Name to add to create pdf
outdir	Folder to store pdf
chr	Chromosome ID
start	Start position
end	End position

HCGB-IGTP/HCGB.IGTP.DAnalysis documentation built on April 13, 2025, 12:03 a.m.