plot_batch_effect: Plot batch effect
In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis
View source: R/DESeq2_functions.R
plot_batch_effect R Documentation
Plot batch effect
Description
This functions plots original PCA and batch corrected given two variables and a putative batch variable
Usage
plot_batch_effect(var1, var2, dds_object, dirName, batch_var)
Arguments
var1
DESeq2 object
var2
DESeq2 object
dds_object
DESeq2 object
dirName
Folder path to store results
batch_var
Putative batch variable
HCGB-IGTP/HCGB.IGTP.DAnalysis documentation built on April 13, 2025, 12:03 a.m.
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View source: R/DESeq2_functions.R
| plot_batch_effect | R Documentation |
Plot batch effect
Description
This functions plots original PCA and batch corrected given two variables and a putative batch variable
Usage
plot_batch_effect(var1, var2, dds_object, dirName, batch_var)
Arguments
var1 |
DESeq2 object |
var2 |
DESeq2 object |
dds_object |
DESeq2 object |
dirName |
Folder path to store results |
batch_var |
Putative batch variable |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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