HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI

This package simplifies the R code in a differential expression analysis for markdown reports. The package includes functions to run DESeq2 using sample and count tibbles as input, get annotated DESeq results for all pairwise comparisons and create interactive plots and other visualizations.

Getting started

Package details

AuthorChris Stubben
Bioconductor views Software
MaintainerChris Stubben <chris.stubben@hci.utah.edu>
LicenseGPL-3
Version1.8
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("HuntsmanCancerInstitute/hciR")
HuntsmanCancerInstitute/hciR documentation built on Aug. 20, 2024, 12:22 a.m.