annotate_results: Annotate DESeq2 results
In HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI
View source: R/annotate_results.R
annotate_results R Documentation
Annotate DESeq2 results
Description
Add BioMart annotations to a DESeq2 result table
Usage
annotate_results(result, biomart, add, id = 1)
Arguments
result
a DESeqResults object with Ensembl IDs as row names
biomart
annotations from read_biomart with id column matching
row names in results
add
a vector of biomart columns to add to result table, default
gene_name, biotype and description
id
position or name of column in biomart that matches rows names in
the DESeq results
Value
A tibble
Author(s)
Chris Stubben
Examples
## Not run:
annotate_results(res, human98)
## End(Not run)
HuntsmanCancerInstitute/hciR documentation built on Aug. 20, 2024, 12:22 a.m.
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View source: R/annotate_results.R
| annotate_results | R Documentation |
Annotate DESeq2 results
Description
Add BioMart annotations to a DESeq2 result table
Usage
annotate_results(result, biomart, add, id = 1)
Arguments
result |
a DESeqResults object with Ensembl IDs as row names |
biomart |
annotations from |
add |
a vector of biomart columns to add to result table, default gene_name, biotype and description |
id |
position or name of column in biomart that matches rows names in the DESeq results |
Value
A tibble
Author(s)
Chris Stubben
Examples
## Not run:
annotate_results(res, human98)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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