gdc_coldata: GDC column data
In HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI
gdc_coldata R Documentation
GDC column data
Description
Removes empty and duplicated columns in the colData slot from GDCprepare
and returns a tibble.
Usage
gdc_coldata(gdc)
Arguments
gdc
a SummarizedExperiment object from GDCprepare in the TCGAbiolinks package.
Value
A tibble
Author(s)
Chris Stubben
Examples
## Not run:
brca <- GDCprepare(query)
meta <- gdc_coldata(brca)
meta
x <- summary_tibble(meta)
x
filter(x, unique==2)
## End(Not run)
HuntsmanCancerInstitute/hciR documentation built on Dec. 10, 2024, 12:22 p.m.
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| gdc_coldata | R Documentation |
GDC column data
Description
Removes empty and duplicated columns in the colData slot from GDCprepare
and returns a tibble.
Usage
gdc_coldata(gdc)
Arguments
gdc |
a SummarizedExperiment object from |
Value
A tibble
Author(s)
Chris Stubben
Examples
## Not run:
brca <- GDCprepare(query)
meta <- gdc_coldata(brca)
meta
x <- summary_tibble(meta)
x
filter(x, unique==2)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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