gdc_rowdata: GDC row data

In HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI

GDC row data

Description

Joins the rowData slot from GDCprepare to Ensembl gene annotations

Usage

gdc_rowdata(gdc, ensembl)

Arguments

gdc	a SummarizedExperiment object from GDCprepare in the TCGAbiolinks package.
ensembl	Ensembl human gene annotations, version 87 is best.

Value

A tibble

Note

Currently works with harmonized data with Ensembl gene ids.

Author(s)

Chris Stubben

Examples

## Not run: 
brca <- GDCprepare(query)
library(hciRdata)
genes <- gdc_rowdata(brca, human90)
genes

## End(Not run)

HuntsmanCancerInstitute/hciR documentation built on Dec. 10, 2024, 12:22 p.m.