plot_biotypes: Plot reads assigned to biotypes

In HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI

Plot reads assigned to biotypes

Description

Plot reads assigned to biotypes

Usage

plot_biotypes(
  x,
  n = 12,
  group = FALSE,
  stack = "percent",
  sort = TRUE,
  barwidth = NULL,
  ...
)

Arguments

x	count matrix from featureCounts with '-g gene_biotype'
n	number of top features to plot, default 12
group	plot all features in 12 groups, default FALSE
stack	plot percent or total reads (percent or normal)
sort	sort by total genes assigned to biotype
barwidth	bar width, default null
...	additional options passed to hc_size

Value

A highchart

Author(s)

Chris Stubben

Examples

## Not run: 
 x <- read_tsv("biotypes.txt")
 plot_biotypes(x)

## End(Not run)

HuntsmanCancerInstitute/hciR documentation built on Dec. 10, 2024, 12:22 p.m.