read_gsea: Read GSEA enrichment files

In HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI

Read GSEA enrichment files

Description

Reads both positive and negative enrichment results from Broad's GSEA into a single table

Usage

read_gsea(gsea_dir, FDR = 0.1)

read_gsea_file(gsea_file)

Arguments

gsea_dir	Path to GSEA output files
FDR	FDR cutoff, default 0.1
gsea_file	GSEA output file

Value

A tibble

Functions

• read_gsea_file(): Read a single GSEA output file

Author(s)

Chris Stubben

Examples

## Not run: 
x <- read_gsea("~/gsea_home/output/dec15/my_analysis.GseaPreranked.1513361740375")

## End(Not run)

HuntsmanCancerInstitute/hciR documentation built on Dec. 10, 2024, 12:22 p.m.