top_genes: Get top genes
In HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI
top_genes R Documentation
Get top genes
Description
Return top genes in DESeq results
Usage
top_genes(res, top = 40, padjust = 0.05, basemean, log2FC, sort_fc = FALSE)
Arguments
res
an annotated DESeq2 results file
top
Number of top genes to display in matrix
padjust
Adjusted p-value cutoff
basemean
basemean cutoff
log2FC
absolute value log2 fold change cutoff
sort_fc
Get the top n/2 up and down-regulated genes sorted by adjusted p-value
Value
A tibble of top genes
Author(s)
Chris Stubben
Examples
top_genes(pasilla$results) %>% dplyr::select(1:7,11)
HuntsmanCancerInstitute/hciR documentation built on Aug. 20, 2024, 12:22 a.m.
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| top_genes | R Documentation |
Get top genes
Description
Return top genes in DESeq results
Usage
top_genes(res, top = 40, padjust = 0.05, basemean, log2FC, sort_fc = FALSE)
Arguments
res |
an annotated DESeq2 results file |
top |
Number of top genes to display in matrix |
padjust |
Adjusted p-value cutoff |
basemean |
basemean cutoff |
log2FC |
absolute value log2 fold change cutoff |
sort_fc |
Get the top n/2 up and down-regulated genes sorted by adjusted p-value |
Value
A tibble of top genes
Author(s)
Chris Stubben
Examples
top_genes(pasilla$results) %>% dplyr::select(1:7,11)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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