read_RnaSeqMetrics: Read CollectRnaSeqMetrics output

In HuntsmanCancerInstitute/hciR: RNA-seq workflows at HCI

Read CollectRnaSeqMetrics output

Description

Reads CollectRnaSeqMetric output files and creates metrics and coverage tables.

Usage

read_RnaSeqMetrics(path = ".", pattern = "\\.txt$")

Arguments

path	the path name to CollectRnaSeqMetrics output files, the default corresponds to the working directory.
pattern	a regular expression, default ".txt$". Only file names which match the regular expression will be loaded.

Value

A list with coverage and stats tables

Author(s)

Chris Stubben

Examples

## Not run: 
   # read all *.txt files in out/ directory
   read_RnaSeqMetrics( "out")
   # read output files matching Control-1 in current directory
   read_RnaSeqMetrics( pattern="Control-1")

## End(Not run)

HuntsmanCancerInstitute/hciR documentation built on March 26, 2024, 3:09 a.m.