read_RnaSeqMetrics: Read CollectRnaSeqMetrics output

Description Usage Arguments Value Author(s) Examples

View source: R/read_RnaSeqMetrics.R

Description

Reads CollectRnaSeqMetric output files and creates metrics and coverage tables.

Usage

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read_RnaSeqMetrics(path = ".", pattern = "\\.txt$")

Arguments

path

the path name to CollectRnaSeqMetrics output files, the default corresponds to the working directory.

pattern

a regular expression, default ".txt$". Only file names which match the regular expression will be loaded.

Value

A list with coverage and stats tables

Author(s)

Chris Stubben

Examples

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## Not run: 
   # read all *.txt files in out/ directory
   read_RnaSeqMetrics( "out")
   # read output files matching Control-1 in current directory
   read_RnaSeqMetrics( pattern="Control-1")

## End(Not run)

HuntsmanCancerInstitute/hciR documentation built on Jan. 10, 2020, 5:52 p.m.