API for ManchesterBioinference/Motif2Site
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
| Global functions | |
|---|---|
| Bed2Granges | Man page Source code |
| CompareBeds2GivenRegions | Man page Source code |
| CompareMotifs2GivenRegions | Man page Source code |
| DeleteMultipleFiles | Man page Source code |
| DetectBindingSites | Man page Source code |
| DetectBindingSitesBed | Man page Source code |
| DetectBindingSitesMotif | Man page Source code |
| DetectFdrCutoffBH | Man page Source code |
| Granges2Bed | Source code |
| Motif2Site | Man page |
| NegativeBinomialTestWithReplicate | Man page Source code |
| combine2Table | Man page Source code |
| combineMotifFiles | Man page Source code |
| combineTestResults | Man page Source code |
| compareBedFiless2UserProvidedRegions | Man page Source code |
| compareMotifs2UserProvidedRegions | Man page Source code |
| computeFoldEnrichment | Man page Source code |
| data | Man page |
| decomposeBindingSignal | Man page Source code |
| deriveHeuristicBindingDistribution | Man page Source code |
| findMotifs | Man page Source code |
| fitKernelDensity | Man page Source code |
| generate1ntBedAlignment | Man page Source code |
| motifBindingNegativeBinomialCount | Man page Source code |
| motifChipCount | Man page Source code |
| motifCount | Man page Source code |
| motifTablePreProcess | Man page Source code |
| pairwisDifferential | Man page Source code |
| quiet | Man page Source code |
| recenterBindingSitesAcrossExperiments | Man page Source code |
| removeNonBellShapedMotifs | Man page |
| strongestMotif | Man page |
