Files in ManchesterBioinference/Motif2Site
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
.Rbuildignore
.gitignore
.gitignoreommit
DESCRIPTION
NAMESPACE
NEWS.md
R/Motif2Site.R
README.md
inst/extdata/FUR_dpd1.bed
inst/extdata/FUR_dpd2.bed
inst/extdata/FUR_fe1.bed
inst/extdata/FUR_fe2.bed
inst/extdata/FurMotifs.bed
inst/extdata/Input1.bed
inst/extdata/Input2.bed
inst/extdata/YeastBedFile1.bed
inst/extdata/YeastBedFile2.bed
inst/extdata/YeastSampleMotif.bed
man/.gitignore
man/Bed2Granges.Rd
man/CompareBeds2GivenRegions.Rd
man/CompareMotifs2GivenRegions.Rd
man/DeleteMultipleFiles.Rd
man/DetectBindingSites.Rd
man/DetectBindingSitesBed.Rd
man/DetectBindingSitesMotif.Rd
man/DetectFdrCutoffBH.Rd
man/Motif2Site.Rd
man/NegativeBinomialTestWithReplicate.Rd
man/combine2Table.Rd
man/combineMotifFiles.Rd
man/combineTestResults.Rd
man/compareBedFiless2UserProvidedRegions.Rd
man/compareMotifs2UserProvidedRegions.Rd
man/computeFoldEnrichment.Rd
man/data.Rd
man/decomposeBindingSignal.Rd
man/deriveHeuristicBindingDistribution.Rd
man/findMotifs.Rd
man/fitKernelDensity.Rd
man/generate1ntBedAlignment.Rd
man/motifBindingNegativeBinomialCount.Rd
man/motifChipCount.Rd
man/motifCount.Rd
man/motifTablePreProcess.Rd
man/pairwisDifferential.Rd
man/quiet.Rd
man/recenterBindingSitesAcrossExperiments.Rd
man/removeNonBellShapedMotifs.Rd
man/strongestMotif.Rd
vignettes/.gitignore
vignettes/Motif2Site.Rmd
vignettes/Motif2Site.bib
