Files in MarcIsak/MSLibrarian
What the Package Does (One Line, Title Case)
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
MSLibrarian.Rproj
NAMESPACE
R/AddDeepLcRt.R
R/CIRT.R
R/CeBenchPlot.R
R/CheckMsFiles.R
R/CreateCalibrationLib.R
R/CreateSpectralLib.R
R/DigestProteins.R
R/ExportSpectraLib.R
R/FeatureFiltering.R
R/FilterLibPrecursors2.R
R/FilterPeptidesTmp.R
R/FilterPrego.R
R/FilterProteins.R
R/FilterTransitions.R
R/GetBestCe.R
R/GetLibPrecursors2.R
R/GetNoZeroIdx.R
R/GetPrecursors.R
R/GetSpectralDb.R
R/ImportCalibrationLib.R
R/ImportPrositLibrary.R
R/LoadPrositLibrary.R
R/MSLibrarianClass.R
R/MakeCalibrationLib.R
R/MakeDeepLcInputs.R
R/MakeMsms2.R
R/MakePredictionDb.R
R/MakePrositCsv.R
R/MakePseudoSpectra.R
R/MakeSpectraLib.R
R/MapDbEntries.R
R/MergePredictionDbs.R
R/ModSpectralLib.R
R/PrecursorBinning.R
R/ProcessCalibrationLib.R
R/ProcessPrositLibrary.R
R/ProteinFilter.R
R/ReadFasta.R
R/ReplaceRts.R
R/RunComet.R
R/RunDeepLc.R
R/RunDiaNN.R
R/RunMsConvert.R
R/RunMsFragger.R
R/RunProphets.R
R/RunSpectralMatch2.R
R/prositAsSpectra.R
README.md
data/cirt.RData
examples/demo_mslibr.Rmd
examples/demo_mslibr.html
man/CalibrationLibrary-class.Rd
man/add.deeplc.rt.Rd
man/ce.bench.plot.Rd
man/check.ms.files.Rd
man/cirt.Rd
man/create.calibration.lib.Rd
man/create.spectral.lib.Rd
man/digest.proteins.Rd
man/export.spectra.lib.Rd
man/feature.filtering.Rd
man/filter.lib.precursors2.Rd
man/filter.peptides.tmp.Rd
man/filter.prego.Rd
man/filter.proteins.Rd
man/filter.transitions.Rd
man/get.best.ce.Rd
man/get.lib.precursors2.Rd
man/get.no.zero.idx.Rd
man/get.precursors.Rd
man/get.spectral.db.Rd
man/import.calibration.lib.Rd
man/import.prosit.library.Rd
man/load.prosit.lib.Rd
man/make.calibration.lib.Rd
man/make.deeplc.inputs.Rd
man/make.msms2.Rd
man/make.prediction.db.Rd
man/make.prosit.csv.Rd
man/make.pseudo.spectra.Rd
man/make.spectra.lib.Rd
man/map.db.entries.Rd
man/merge.prediction.dbs.Rd
man/mod.spectral.lib.Rd
man/precursor.binning.Rd
man/process.calibration.lib.Rd
man/process.prosit.lib.Rd
man/prosit.as.spectra.Rd
man/protein.filter.Rd
man/read.fasta.Rd
man/replace.rts.Rd
man/run.comet.Rd
man/run.deeplc.Rd
man/run.diann.Rd
man/run.msconvert.Rd
man/run.msfragger.Rd
man/run.prophets.Rd
man/run.spectral.match2.Rd
params/comet_mslibrarian_default.params
params/diaumpire_se_mslibrarian_default.params
params/fragger_closed_mslibrarian_default.params
params/fragger_closed_mslibrarian_default_tmp.params
params/fragger_test1.params
params/spectrast_create_mslibrarian_default.params
