run.msfragger: Runs the MSFragger database search tool on pseudo-DDA MS/MS...
In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)
run.msfragger R Documentation
Runs the MSFragger database search tool on pseudo-DDA MS/MS spectra
Description
Runs the MSFragger database search tool on pseudo-DDA MS/MS spectra
Usage
run.msfragger(msfragger, fragParams, msFiles, fasta, decoyDb)
Arguments
msfragger
path to MSFragger executable
fragParams
path to MSFragger parameters file
msFiles
input pseudo-dda MS/MS files
fasta
input fasta file
decoyDb
path to DecoyDatabase executable (part of OpenMS)
MarcIsak/MSLibrarian documentation built on Aug. 27, 2022, 4:55 a.m.
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| run.msfragger | R Documentation |
Runs the MSFragger database search tool on pseudo-DDA MS/MS spectra
Description
Runs the MSFragger database search tool on pseudo-DDA MS/MS spectra
Usage
run.msfragger(msfragger, fragParams, msFiles, fasta, decoyDb)
Arguments
msfragger |
path to MSFragger executable |
fragParams |
path to MSFragger parameters file |
msFiles |
input pseudo-dda MS/MS files |
fasta |
input fasta file |
decoyDb |
path to DecoyDatabase executable (part of OpenMS) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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