feature.filtering: Performs a filtering of MSLibrarian-predicted libraries based...

In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)

Performs a filtering of MSLibrarian-predicted libraries based on extracted features

Description

Performs a filtering of MSLibrarian-predicted libraries based on extracted features

Usage

feature.filtering(inputLib, outputLib, dinoPath, mzml, tolMz, tolRt, threads)

Arguments

inputLib	input spectral library in Spectronaut .csv format
outputLib	filtered output spectral library in Spectronaut .csv format
dinoPath	path to the Dinosaur application (.jar) for feature extraction.
mzml	path to a mzml file. If a features file is supplied, this parameter is ignored.
tolMz	integer specifying the Precursor M/Z tolerance in PPM (default:10)
tolRt	allowed retention time tolerance in minutes for targets in library (default:5)
threads	number of threads to use for feature matching

MarcIsak/MSLibrarian documentation built on Aug. 27, 2022, 4:55 a.m.