filter.transitions: Performs transition filtering of a library, either based on...

In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)

Performs transition filtering of a library, either based on the top N most intense transitions, or with a defined relative intensity cutoff

Usage

## S3 method for class 'transitions'
filter(
  inputLib = NULL,
  outputLib = NULL,
  topTrans = NULL,
  cutoffTrans = NULL,
  minTrans = NULL,
  replace = F,
  threads = detectCores()
)

Arguments

inputLib	path to library that will be filtered in Spectronaut (.csv) format.
outputLib	path to transition filtered library (Spectronaut *.csv)
topTrans	integer specifying the top n transitions to retain for each precursor in the library
cutoffTrans	a transition relative intensity cutoff (range 0-1). A cutoff = 0.05 means that transitions having an intensity < 5 \item minTransinteger giving the minimum number of transitions that a precursor must have. Default is NULL, meaning that no filtering is performed. \item replacelogical indicating if the input library be replaced (default = FALSE) \item threadsnumber of threads to use for processing

Performs transition filtering of a library, either based on the top N most intense transitions, or with a defined relative intensity cutoff

MarcIsak/MSLibrarian documentation built on Aug. 27, 2022, 4:55 a.m.