digest.proteins: Returns peptide sequences resulting from protein digestion...

In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)

Returns peptide sequences resulting from protein digestion based on cleavage rules, max.missed cleavages,

Description

Returns peptide sequences resulting from protein digestion based on cleavage rules, max.missed cleavages,

Usage

digest.proteins(msLib, rowStr, enzyme, maxMissed, carbamidomethyl, threads)

Arguments

msLib	a MSLibrarian object
rowStr	a string defining the row names.
enzyme	the enzyme to be used for digestion. The enzyme cleaves proteins according to the specified cleavage rules.
maxMissed	maximum missed clevages allowed for a peptide sequence
carbamidomethyl	Determines if every Cysteine residue is carbamidomethylated(TRUE) or not (FALSE). If TRUE, every cysteine adds a mass of 57.021464.
threads	number of threads to use for the computation

MarcIsak/MSLibrarian documentation built on Aug. 27, 2022, 4:55 a.m.