make.prosit.csv: Generates a CSV file with precursor information, to be used...

In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)

Generates a CSV file with precursor information, to be used for prediction of MS/MS spectra in Prosit.

Description

Generates a CSV file with precursor information, to be used for prediction of MS/MS spectra in Prosit.

Usage

make.prosit.csv(
  fasta,
  chargeRange,
  ceRange,
  prefix,
  outputFolder,
  threads = detectCores()
)

Arguments

fasta	input fasta file
chargeRange	Charge ranges considered for precursor ions.
ceRange	Collision energy range for predictions.
prefix	file prefix to use (like the species from which the fasta file is derived)
outputFolder	full path to the output CSV file
threads	number of threads to use

MarcIsak/MSLibrarian documentation built on Aug. 27, 2022, 4:55 a.m.