run.prophets: Runs PeptideProphet and iProphet on input Comet search engine...
In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)
run.prophets R Documentation
Runs PeptideProphet and iProphet on input Comet search engine results
Description
Runs PeptideProphet and iProphet on input Comet search engine results
Usage
run.prophets(
interactPath,
peptideProphetPath,
interProphetPath,
searchFiles,
output,
threads
)
Arguments
interactPath
Absolute path to the interactparser.exe
peptideProphetPath
Absolute path to the peptideprophetparser.exe
interProphetPath
Absolute path to the interprophetparser.exe
searchFiles
input Comet database search result files (pepXML)
output
Absolute path to the desired output folder
threads
integer giving the number of threads to use
MarcIsak/MSLibrarian documentation built on Aug. 27, 2022, 4:55 a.m.
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| run.prophets | R Documentation |
Runs PeptideProphet and iProphet on input Comet search engine results
Description
Runs PeptideProphet and iProphet on input Comet search engine results
Usage
run.prophets( interactPath, peptideProphetPath, interProphetPath, searchFiles, output, threads )
Arguments
interactPath |
Absolute path to the interactparser.exe |
peptideProphetPath |
Absolute path to the peptideprophetparser.exe |
interProphetPath |
Absolute path to the interprophetparser.exe |
searchFiles |
input Comet database search result files (pepXML) |
output |
Absolute path to the desired output folder |
threads |
integer giving the number of threads to use |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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