filter.prego: Filter spectral library based on top N high responding...

In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)

Filter spectral library based on top N high responding peptides for each protein group

Description

Filter spectral library based on top N high responding peptides for each protein group

Usage

## S3 method for class 'prego'
filter(
  inputLib = NULL,
  outputLib = NULL,
  topPept = NULL,
  pregoPath = NULL,
  replace = F
)

Arguments

inputLib	absolute path to input spectral library (Spectronaut .CSV format or OpenSwath format .TSV)
outputLib	absolute path to the filtered output library
topPept	integer giving the top N high responding peptides for each protein group in the library
pregoPath	path to the classify.exe tool as part of the PREGO distribution
replace	logical determining if the input library should be replaced by the filtered library (default is FALSE)

MarcIsak/MSLibrarian documentation built on Aug. 27, 2022, 4:55 a.m.