replace.rts: Replaces the retention times for an input spectral library
In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)

replace.rts

R Documentation

Replaces the retention times for an input spectral library

Description

Replaces the retention times for an input spectral library

Usage

replace.rts(
  inputLib = NULL,
  outputLib = NULL,
  calibrationLib = NULL,
  outputFolder = NULL,
  nCal = 0.33,
  deeplc = NULL,
  replace = F,
  threads = detectCores()
)

Arguments

`inputLib`	input spectral library that will have its retention times replaced.
`outputLib`	path to output library
`calibrationLib`	calibration library object used to extract calibration peptides for DeepLC
`outputFolder`	desired path to output folder for DeepLC results
`nCal`	decimal number giving the proportion of calibration peptides in calibrationLib to use (default = 0.33)
`deeplc`	path to the DeepLC GUI installation folder (will try to auto-detect it by default)
`replace`	should the input library be replaced(logical)? Default is FALSE