process.calibration.lib: Creates and processes a calibration library object

In MarcIsak/MSLibrarian: What the Package Does (One Line, Title Case)

Creates and processes a calibration library object

Description

Creates and processes a calibration library object

Usage

process.calibration.lib(
  specLib = NULL,
  projectFolder = NULL,
  predictionDb,
  rt = NULL,
  outLib = str_replace(specLib, ".tsv", ".RData"),
  threads = detectCores()
)

Arguments

specLib	path to spectral library (in TSV-format, as processed by make.calibration.lib). Not necessary if the project Folder argument is added
projectFolder	Path to project folder. If not specified it is necessary to add the specLib argument.
predictionDb	path to SQLite database with Prosit predictions.
rt	character specifying the input library retention time format. Possible values: c("seconds", "iRT")
outLib	desired path to the output calibration library (.RData format)
threads	number of threads to use

MarcIsak/MSLibrarian documentation built on Aug. 27, 2022, 4:55 a.m.