Man pages for Naoto-Imamachi/BridgeR
Comprehensive BRIC-seq data analysis tool

BridgeRCompare	Comparison of two BRIC-seq datasets
BridgeRCompareFig	Draw scattered plot to compare RNA half-life between two...
BridgeRCore	Default BRIC-seq data analysis pipeline
BridgeRCustom	Custom BRIC-seq data analysis pipeline
BridgeRDatasetChecker	Check BRIC-seq dataset
BridgeRDataSetFromCuffnorm	Prepare your BRIC-seq dataset analyzed
BridgeRDraw	Draw fitting decay curve for BRIC-seq data
BridgeRDrawFittingCurve	Draw fitting decay curve for BRIC-seq data
BridgeReport	Draw fitting decay curve for BRIC-seq data
BridgeRHalfLifecalc	Calculation of RNA half-life for each gene
BridgeRHalfLifeCalcModel3	Calculate RNA half-life from BRIC-seq data
BridgeRHalfLifeCalcR2Select	Calculate RNA half-life from BRIC-seq data
BridgeRHalfLifeCalcRaw	Calculate RNA half-life from BRIC-seq data
BridgeRHalfLifeCalibration	Calibrate RNA half-life.
BridgeRHalfLifeComparison	Draw scattered plot to compare RNA half-life between two...
BridgeRHalfLifeDifferenceBox	Draw boxplot to compare RNA half-life distribution between...
BridgeRHalfLifeDifferenceHist	Draw histgram to compare RNA half-life difference between two...
BridgeRHalfLifeDistribution	Draw boxplot to compare RNA half-life distribution between...
BridgeRHalfSD	Calculate RNA half-life SD
BridgeRHalfSDGrubbsTest	Calculate RNA half-life SD
BridgeRHKGenes	Classic BRIC-seq data analysis pipeline
BridgeRNormalization	Normalize relative RPKM (0h = 1)
BridgeRNormalizationFactors	Estimate normalization factor
BridgeRNormalizationFactorsHK	Estimate normalization factor using house-keeping genes
BridgeRNormalizationForLuc2	Estimate normalization factor using suctom normalization...
BridgeR-package	An R library for comprehensive BRIC-seq data analysis tool
BridgeRPvalueEvaluation	Calculate RNA half-life from BRIC-seq data
test_q	estimate percentile data