BridgeRHalfLifeCalcRaw: Calculate RNA half-life from BRIC-seq data
In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool

Description Usage Arguments Details Value Note Author(s) References Examples

View source: R/Z5_estimate_fitting_decay_curve.r

Calculate RNA half-life from BRIC-seq data

1	BridgeRHalfLifeCalcRaw(filename = "BridgeR_4_Normalized_expression_data.txt", group, hour, InforColumn = 4, CutoffRelExp = 0.1, CutoffDataPoint = 3, OutputFile = "BridgeR_5_HalfLife_calculation.txt")

`filename`	File path/name
`group`	Vector(string)
`hour`	Vector(number)
`InforColumn`	Integer
`CutoffRelExp`	Number(Integer or Float)
`CutoffDataPoint`	Integer
`OutputFile`	File path/name

Calculate RNA half-life from BRIC-seq data

text file

2015-11-05

Naoto Imamachi

https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
#inputfile <- "BridgeR_4_Normalized_expression_dataset.txt"
#outputfile <- "BridgeR_5_HalfLife_calculation.txt"
#group <- c("Control","knockdown1","knockdown2")
#hour <- c(0,1,2,4,8,12)

#BridgeRHalfLifeCalculation(filename=inputfile, group=group, hour=hour, OutputFile=outputfile)

## The function is currently defined as
function (filename = "BridgeR_4_Normalized_expression_data.txt", 
    group, hour, InforColumn = 4, CutoffRelExp = 0.1, CutoffDataPoint = 3, 
    OutputFile = "BridgeR_5_HalfLife_calculation.txt") 
{
}