Description Usage Arguments Details Value Note Author(s) References Examples
View source: R/Z5_estimate_fitting_decay_curve.r
Calculate RNA half-life from BRIC-seq data
1 | BridgeRHalfLifeCalcRaw(filename = "BridgeR_4_Normalized_expression_data.txt", group, hour, InforColumn = 4, CutoffRelExp = 0.1, CutoffDataPoint = 3, OutputFile = "BridgeR_5_HalfLife_calculation.txt")
|
filename |
File path/name |
group |
Vector(string) |
hour |
Vector(number) |
InforColumn |
Integer |
CutoffRelExp |
Number(Integer or Float) |
CutoffDataPoint |
Integer |
OutputFile |
File path/name |
Calculate RNA half-life from BRIC-seq data
text file
2015-11-05
Naoto Imamachi
https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
#inputfile <- "BridgeR_4_Normalized_expression_dataset.txt"
#outputfile <- "BridgeR_5_HalfLife_calculation.txt"
#group <- c("Control","knockdown1","knockdown2")
#hour <- c(0,1,2,4,8,12)
#BridgeRHalfLifeCalculation(filename=inputfile, group=group, hour=hour, OutputFile=outputfile)
## The function is currently defined as
function (filename = "BridgeR_4_Normalized_expression_data.txt",
group, hour, InforColumn = 4, CutoffRelExp = 0.1, CutoffDataPoint = 3,
OutputFile = "BridgeR_5_HalfLife_calculation.txt")
{
}
|
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