BridgeReport: Draw fitting decay curve for BRIC-seq data

In Naoto-Imamachi/BridgeR: Comprehensive BRIC-seq data analysis tool

Description

Draw fitting decay curve for BRIC-seq data

Usage

BridgeReport(filename1 = "siStealth_compatible_genes_RefSeq_result_mRNA.fpkm_table",
                         filename2 = "siPUM1_compatible_genes_RefSeq_result_mRNA.fpkm_table",
                         filename3 = "BridgeR_5C_HalfLife_calculation_R2_selection.txt",
                         group,
                         hour,
                         ComparisonFile,
                         SearchRow = "symbol",
                         InforColumn = 4,
                         Color = c("black","red"),
                         CutoffDataPoint1 = c(1,2),
                         CutoffDataPoint2 = c(8,12))

Arguments

filename1	File path/name
filename2	File path/name
filename3	File path/name
group	Vector(string)
hour	Vector(number)
ComparisonFile	Vector(string)
SearchRow	String(header)
InforColumn	Integer
Color	vector(color name)
CutoffDataPoint1	vector(Integer or float)
CutoffDataPoint2	vector(Integer or float)

Details

Draw fitting decay curve for BRIC-seq data

Value

text and fig files

Note

2015-11-26

Author(s)

Naoto Imamachi

References

https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (filename1 = "siStealth_compatible_genes_RefSeq_result_mRNA.fpkm_table",
                         filename2 = "siPUM1_compatible_genes_RefSeq_result_mRNA.fpkm_table",
                         filename3 = "BridgeR_5C_HalfLife_calculation_R2_selection.txt",
                         group,
                         hour,
                         ComparisonFile,
                         SearchRow = "symbol",
                         InforColumn = 4,
                         Color = c("black","red"),
                         CutoffDataPoint1 = c(1,2),
                         CutoffDataPoint2 = c(8,12))
{
}

Naoto-Imamachi/BridgeR documentation built on May 7, 2019, 6:05 p.m.