Description Usage Arguments Details Value Note Author(s) References Examples
Draw fitting decay curve for BRIC-seq data
1 2 3 4 5 6 7 8 9 10 11 | BridgeReport(filename1 = "siStealth_compatible_genes_RefSeq_result_mRNA.fpkm_table",
filename2 = "siPUM1_compatible_genes_RefSeq_result_mRNA.fpkm_table",
filename3 = "BridgeR_5C_HalfLife_calculation_R2_selection.txt",
group,
hour,
ComparisonFile,
SearchRow = "symbol",
InforColumn = 4,
Color = c("black","red"),
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12))
|
filename1 |
File path/name |
filename2 |
File path/name |
filename3 |
File path/name |
group |
Vector(string) |
hour |
Vector(number) |
ComparisonFile |
Vector(string) |
SearchRow |
String(header) |
InforColumn |
Integer |
Color |
vector(color name) |
CutoffDataPoint1 |
vector(Integer or float) |
CutoffDataPoint2 |
vector(Integer or float) |
Draw fitting decay curve for BRIC-seq data
text and fig files
2015-11-26
Naoto Imamachi
https://github.com/Naoto-Imamachi/BRIC-seq_data_analysis/tree/master/BridgeR
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function (filename1 = "siStealth_compatible_genes_RefSeq_result_mRNA.fpkm_table",
filename2 = "siPUM1_compatible_genes_RefSeq_result_mRNA.fpkm_table",
filename3 = "BridgeR_5C_HalfLife_calculation_R2_selection.txt",
group,
hour,
ComparisonFile,
SearchRow = "symbol",
InforColumn = 4,
Color = c("black","red"),
CutoffDataPoint1 = c(1,2),
CutoffDataPoint2 = c(8,12))
{
}
|
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